Transcription Factor
| Accessions: | UP00293A (UniPROBE 20160601) |
| Names: | Putative 91.0 kDa zinc finger protein in SPT4-ROM1 intergenic region, Ygr067c |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P53243 |
| Description: | Putative protein of unknown function; contains a zinc finger motif similar to that of Adr1p |
| Length: | 108 |
| Pfam Domains: | 7-29 C2H2-type zinc finger 7-29 Zinc finger, C2H2 type 24-45 Zinc-finger double domain 35-58 C2H2-type zinc finger 35-58 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 AAGQKKYICSFCLKPFSRSEHKIRHERSHAGVKPFQCQVCKHSFVRRDLLQRHIRTVHRT 60 61 FLLSSYASMTGDKADIPVSLGVGDVDSTSPRDIKMETLVNSMIKVNSG |
| Interface Residues: | 2, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 28, 45, 46, 47, 48, 49, 50, 51, 52, 53, 72, 74, 75, 78, 85, 86, 88, 89 |
| 3D-footprint Homologues: | 2jpa_A, 7w1m_H, 7ysf_A, 6jnm_A, 3uk3_C, 8cuc_F, 2kmk_A, 1tf3_A, 7y3l_A, 1g2f_F, 7n5w_A, 2lt7_A, 1tf6_A, 6u9q_A, 5yel_A, 4x9j_A, 2i13_A, 1llm_D, 7txc_E, 6e94_A, 5kl3_A, 2wbs_A, 1ubd_C, 6wmi_A, 5ei9_F, 8ssq_A, 1mey_C, 2drp_D, 1f2i_J, 6ml4_A, 5v3j_F, 6blw_A, 5kkq_D, 8h9h_G, 5und_A, 5k5i_A, 4m9v_C, 2gli_A, 7y3m_I, 7eyi_G, 6a57_A, 8gn3_A, 5yj3_D |
| Binding Motifs: | UP00293A_1 kgsastGCGGGGTAmtgyAa |
| Binding Sites: | AACCCCAC ACCCCACC ACCCCACT ACCCCGCA ACCCCGCC AGGCGGGG AGGTGGGG AGTGGGGG ATGTGGGG CCCCACCA CCCCACCC CCCCACTA CCCCACTC CCCCCACC CCCCCGCA CCCCGCAA CCCCGCAG GAGGGGTA GCGGGGCA GCGGGGTA |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.