Transcription Factor
| Accessions: | T23654 (AthalianaCistrome v4_May2016), Q9LVA1 (JASPAR 2024) |
| Names: | AT5G62380, T23654;, VND6, ANAC101, NAC domain-containing protein 101, NC101_ARATH, Protein VASCULAR RELATED NAC-DOMAIN 6 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC |
| Length: | 348 |
| Pfam Domains: | 8-136 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MESLAHIPPGYRFHPTDEELVDYYLKNKVAFPGMQVDVIKDVDLYKIEPWDIQELCGRGT 60 61 GEEREWYFFSHKDKKYPTGTRTNRATGSGFWKATGRDKAIYSKQELVGMRKTLVFYKGRA 120 121 PNGQKSDWIMHEYRLETDENGPPHEEGWVVCRAFKKKLTTMNYNNPRTMMGSSSGQESNW 180 181 FTQQMDVGNGNYYHLPDLESPRMFQGSSSSSLSSLHQNDQDPYGVVLSTINATPTTIMQR 240 241 DDGHVITNDDDHMIMMNTSTGDHHQSGLLVNDDHNDQVMDWQTLDKFVASQLIMSQEEEE 300 301 VNKDPSDNSSNETFHHLSEEQAATMVSMNASSSSSPCSFYSWAQNTHT |
| Interface Residues: | 76, 81, 83, 92, 94, 96, 116, 120, 121, 122, 125 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0638 TTGCKTgwwwttyAmGywWyc M0688 TGCkTgwdtttyAmG UN0377.1 wwcAAGCAAhm MA2050.1 wwrCAAGCAAtmw MA2050.2 CAAGCAA |
| Binding Sites: | UN0377.1.13 UN0377.1.14 UN0377.1.15 UN0377.1.16 UN0377.1.17 UN0377.1.18 UN0377.1.20 UN0377.1.5 UN0377.1.6 UN0377.1.8 UN0377.1.9 UN0377.1.10 UN0377.1.11 UN0377.1.1 UN0377.1.3 UN0377.1.7 UN0377.1.19 UN0377.1.2 UN0377.1.12 UN0377.1.4 MA2050.1.1 MA2050.1.6 MA2050.1.8 MA2050.1.19 MA2050.1.5 MA2050.1.10 MA2050.1.11 MA2050.1.12 MA2050.1.13 MA2050.1.14 MA2050.1.15 MA2050.1.16 MA2050.1.17 MA2050.1.18 MA2050.1.2 MA2050.1.20 MA2050.1.3 MA2050.1.4 MA2050.1.7 MA2050.1.9 MA2050.2.1 / MA2050.2.10 / MA2050.2.11 / MA2050.2.12 / MA2050.2.13 / MA2050.2.15 / MA2050.2.19 / MA2050.2.20 / MA2050.2.5 / MA2050.2.6 / MA2050.2.7 / MA2050.2.8 MA2050.2.14 MA2050.2.2 / MA2050.2.9 MA2050.2.16 MA2050.2.17 / MA2050.2.3 MA2050.2.18 MA2050.2.4 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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