DNA Binding Motif

						

			
Accessions: M0638 (AthalianaCistrome v4_May2016)

			
Names: T23654;, VND6.DAP
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 21
Consensus: TTGCKTgwwwttyAmGywWyc
Weblogo: 
PSSM: P0      A      C      G      T
01     47      0      2    550      T
02     70     15     40    474      T
03    108     43    409     39      G
04     12    587      0      0      C
05      0      0    175    424      K
06      0      0      0    599      T
07    102    104    331     62      g
08    180    107     67    245      w
09    212     51    138    198      w
10    159    113    113    214      w
11    116    129     77    277      t
12    122     76    110    291      t
13      9    238     54    298      y
14    599      0      0      0      A
15    245    354      0      0      m
16      0      0    546     53      G
17     31    279     33    256      y
18    264    108      3    224      w
19    421      0      4    174      W
20     85    264     55    195      y
21    126    288     90     95      c
Binding TFs: T23654 (No apical meristem (NAM) protein)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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