Transcription Factor

						

			
Accessions: Q4H389 (JASPAR 2024)

			
Names: Q4H389_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H389
Length: 625
Pfam Domains:   166-220 LIM domain
  224-270 LIM domain
  393-449 Homeobox domain
  417-445 Homeobox KN domain
Sequence: 
(in bold interface residues)		   1 MLRSSNDEKLKHRQTKLATSGKAATPMHVSNREMGYNGVNDVGLLGKDRFPDERFMTSSS   60
  61 VTSSNSWSQVDELGDFGQFDSLSNTSPVDLFSETTNVAQQEKSTQGMKAEASPTDISSCR  120
 121 KSPGSCKSEEHFSATKMNENGIDLCINMDPQCENSQTSQYSQMSICQGCDYLIEDQYLLN  180
 181 IGGFSWHESCAKCVICRLKLQQSCFFSDGQLYCKKDYQQTRKKCSGCGSKIESEELVMRV  240
 241 ATSGYVYHVGCFACVTCKRLLRKGDEFVMNRHNEKRAKSCTRFDLQCKNCWSERDTLLKA  300
 301 GHDSQMIKSLPCAPDAKTSSLPSPGVSSDVTDMTSPKSPHCVLSPKSDDDDATSSDDEST  360
 361 VGNFNSSKDDVGEDGKRPRDNDDVDSKDGKRSKRPRTILNAVQRRAFKAAFEVTPKPCRK  420
 421 VRETLAKDTGLTVRVVQVWFQNQRAKMKKLAKRQQSQEAAAQKAREEFGYHVFDQMGSMP  480
 481 HQIQHMMPGSEGMMEKMFGQFHHQQVHGQINGRRMGVPWDQHPNDAIGFGQGQLYHEASG  540
 541 YQENMAVPQNVTITSQMDGMIPQPMRIPLNHNMTPHPPAYQGNMQIHDVIHPADMHVTSS  600
 601 PGNHPNDVTTPIDGLYSMQNNYFSS
Interface Residues: 391, 392, 393, 394, 396, 434, 435, 437, 438, 441, 442, 444, 445, 446, 449
3D-footprint Homologues: 1jgg_B, 3d1n_M, 2ld5_A, 1fjl_B, 1nk2_P, 8ejp_B, 6a8r_A, 1ig7_A, 3cmy_A, 8pmf_A, 5zfz_A, 6m3d_C, 3lnq_A, 2lkx_A, 2r5y_A, 5flv_I, 2hos_A, 9b8u_A, 1au7_A, 8ik5_C, 5hod_A, 1b72_A, 3a01_E, 2d5v_B, 8osb_E, 7q3o_C, 3rkq_B, 8eml_B, 6es3_K, 4xrs_G, 2hdd_A, 5jlw_D, 1e3o_C, 1le8_A, 2xsd_C, 7xrc_C, 1puf_A, 8g87_X, 8bx1_A, 5zjt_E, 4qtr_D, 1puf_B, 7psx_B, 4xrm_B, 1o4x_A, 1du0_A, 4cyc_A
Binding Motifs: MA1896.1 wwwwwaatTAATTaawtwww
MA1896.2 tTAATTa
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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