DNA Binding Motif

						

			
Accessions: MA1896.2 (JASPAR 2024)

			
Names: Lmx-b
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 7
Consensus: tTAATTa
Weblogo: 
PSSM: P0      A      C      G      T
01    100    102    124    675      t
02     33     32     14    921      T
03    915     27     25     34      A
04    936     18     20     25      A
05     36     22     21    922      T
06     66     38     43    852      T
07    572     82    182    164      a
Type: Heterodimer
Binding TFs: Q4H389 (Homeobox domain, LIM domain, Homeobox KN domain)
Q4H389
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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