DNA Binding Motif

						

			
Accessions: MA1896.1 (JASPAR 2024)

			
Names: Lmx-b
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: SELEX
Length: 20
Consensus: wwwwwaatTAATTaawtwww
Weblogo: 
PSSM: P0      A      C      G      T
01    287    221    223    268      w
02    285    228    219    268      w
03    272    233    225    270      w
04    264    226    227    283      w
05    278    196    180    345      w
06    415    181    173    231      a
07    440    161    184    216      a
08    100    102    124    675      t
09     33     32     14    921      T
10    915     27     25     34      A
11    936     18     20     25      A
12     36     22     21    922      T
13     66     38     43    852      T
14    572     82    182    164      a
15    328    246    216    210      a
16    257    224    219    300      w
17    248    207    204    341      t
18    261    219    205    315      w
19    260    223    222    295      w
20    260    227    230    283      w
Type: Heterodimer
Binding TFs: Q4H389 (Homeobox domain, LIM domain, Homeobox KN domain)
Q4H389
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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