DNA Binding Site
| Accessions: | GTACACAC (UniPROBE 20160601), MA0148.5.18 (JASPAR 2024), MA1446.2.1 (JASPAR 2024), MA1446.2.15 (JASPAR 2024) |
| Organisms: | Plasmodium falciparum, Homo sapiens, Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | GTACACAC |
| Type: | Heterodimer |
| Binding TFs: | P55317 (Fork head domain, Forkhead N-terminal region, HNF3 C-terminal domain) UP00429A (AP2 domain) UP00599D (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) O16850 (Fork head domain) O16850 P55317 |
| Binding Motifs: | UP00429A_1 thdwrwryACACACayyyrrrw UP00599D_2 wkhwasaCACATwaCAkwaakyk MA0148.5 GTAAACAT MA1446.2 GTAAACAc |
| Publications: | Campbell TL, De Silva EK, Olszewski KL, Elemento O, Llinás M. Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite. PLoS Pathog : (2010). [Pubmed] Zhang Y, Liu T, Meyer C.A, Eeckhoute J, Johnson D.S, Bernstein B.E, Nusbaum C, Myers R.M, Brown M, Li W, Liu X.S. Model-based analysis of ChIP-Seq (MACS). Genome biology 9:R137 (2008). [Pubmed] Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
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