DNA Binding Site
| Accessions: | AGTCAACG (UniPROBE 20160601), MA1076.3.10 (JASPAR 2024), MA1076.3.11 (JASPAR 2024), MA1076.3.13 (JASPAR 2024), MA1076.3.2 (JASPAR 2024), MA1076.3.4 (JASPAR 2024), MA1076.3.5 (JASPAR 2024), MA1076.3.8 (JASPAR 2024), MA1076.3.9 (JASPAR 2024), MA1081.3.1 (JASPAR 2024), MA1081.3.11 (JASPAR 2024), MA1081.3.12 (JASPAR 2024), MA1081.3.13 (JASPAR 2024), MA1081.3.15 (JASPAR 2024), MA1081.3.17 (JASPAR 2024), MA1081.3.6 (JASPAR 2024), MA1081.3.7 (JASPAR 2024), MA1081.3.9 (JASPAR 2024), MA1307.3.1 (JASPAR 2024), MA1307.3.10 (JASPAR 2024), MA1307.3.14 (JASPAR 2024), MA1307.3.17 (JASPAR 2024), MA1307.3.18 (JASPAR 2024), MA1307.3.2 (JASPAR 2024), MA1307.3.4 (JASPAR 2024), MA1307.3.5 (JASPAR 2024), MA1307.3.7 (JASPAR 2024), MA1307.3.8 (JASPAR 2024), MA1307.3.9 (JASPAR 2024) |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | AGTCAACG |
| Type: | Heterodimer |
| Binding TFs: | O22921 (WRKY DNA -binding domain) O22176 (WRKY DNA -binding domain, Plant zinc cluster domain) Q93WT0 (WRKY DNA -binding domain) UP00582A (WRKY DNA -binding domain) O22176 O22921 Q93WT0 |
| Binding Motifs: | UP00582A_1 yrsCGTTGACywr UP00582A_2 yccGTTGACCsrm MA1076.3 rGTCAACG MA1081.3 rGTCAACG MA1307.3 rGTCAACG |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.