Transcription Factor
| Accessions: | UP00582A (UniPROBE 20160601) |
| Names: | ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, At4g31800, AtWRKY18, F11C18.16, F28M20.10, WRKY transcription factor 1, WRKY transcription factor 18, WRKY1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | WRKY transcription factor 1: Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. |
| Length: | 106 |
| Pfam Domains: | 41-99 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 DYNSPTAKRRKKGGNIELSPVERSTNDSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPY 60 61 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPGRVV |
| Interface Residues: | 42, 45, 48, 49, 50, 52, 53, 64 |
| 3D-footprint Homologues: | 7vru_B, 6j4g_B, 6ir8_A, 6j4e_B, 6j4f_F, 7z0u_A |
| Binding Motifs: | UP00582A_1 yrsCGTTGACywr UP00582A_2 yccGTTGACCsrm |
| Binding Sites: | GGGTCAAC AAAGTCAA AAGTCAAC ACGGTCAA AGGTCAAC AGTCAAAC AGTCAACG CCGGTCAA CGGTCAAA CGGTCAAC CGTTGACC GCGTTGAC GGTCAAAC GGTCAACA GGTCAACC GTTGACCA GTTGACTA TCGGTCAA TGGTCAAA TTGACCAA |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.