DNA Binding Motif

						

			
Accessions: RFX3_BHLHA15 (HumanTF2 1.0)

			
Names: RFX3_BHLHA15
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 18
Consensus: TrGCaACgavCATATGkt
Weblogo: 
PSSM: P0      A      C      G      T
01     48     21     40    255      T
02    178      2    186     14      r
03     23     15    364      4      G
04     45    296     23     68      C
05    364     12     67    140      a
06    364      4     12      0      A
07      5    364     16     25      C
08     65     69    208     22      g
09    172     48     83     62      a
10    103    157     93     11      v
11      0    364      0      5      C
12    364      5     30     17      A
13      0     17     32    364      T
14    364      7      0     10      A
15      0     21      7    364      T
16      0      0    364     28      G
17      0     37    242    122      k
18     47     68     47    203      t
Type: Heterodimer
Binding TFs: BHLHA15_TF2 (Helix-loop-helix DNA-binding domain)
RFX3_TF1 (RFX DNA-binding domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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