DNA Binding Motif

						

			
Accessions: 4jcx_AB (3D-footprint 20231221)

			
Names: Csp231I C protein
Organisms: Citrobacter sp. RFL231
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OL operator complex
Length: 15
Consensus: CTAAnTnnnnnTTAG
Weblogo: 
PSSM: P0      A      C      G      T
01      0     88      0      8      C
02     11      8      8     69      T
03     96      0      0      0      A
04     96      0      0      0      A
05     24     24     24     24      n
06      8     11      8     69      T
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12      0      0      0     96      T
13      0      0      0     96      T
14     69      8      8     11      A
15      0      0     96      0      G
Type: Heterodimer
Binding TFs: 4jcx_A (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain)
4jcx_B (Helix-turn-helix, Helix-turn-helix domain, Helix-turn-helix domain)
Binding Sites: 4jcx_C
4jcx_D
			
Publications: Shevtsov M.B, Streeter S.D, Thresh S.J, Swiderska A, McGeehan J.E, Kneale G.G. Structural analysis of DNA binding by C.Csp231I, a member of a novel class of R-M controller proteins regulating gene expression. Acta crystallographica. Section D, Biological crystallography 71:398-407 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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