DNA Binding Motif

						

			
Accessions: 3f27_D (3D-footprint 20231221)

			
Names: Transcription factor SOX-17
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of Sox17 Bound to DNA
Length: 6
Consensus: ACAATa
Weblogo: 
PSSM: P0      A      C      G      T
01     96      0      0      0      A
02      0     96      0      0      C
03     96      0      0      0      A
04     96      0      0      0      A
05      0     19      0     77      T
06     38     19     19     20      a
Binding TFs: 3f27_D (HMG (high mobility group) box, Domain of unknown function (DUF1898))
Binding Sites: 3f27_A
3f27_B
			
Publications: Palasingam P, Jauch R, Ng C.K, Kolatkar P.R. The structure of Sox17 bound to DNA reveals a conserved bending topology but selective protein interaction platforms. Journal of molecular biology 388:619-30 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.