DNA Binding Motif
| Accessions: | 3jrb_AB (3D-footprint 20231221) |
| Names: | DNA-binding protein fis |
| Organisms: | Escherichia coli, strain K12 |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Description: | Crystal structure of Fis bound to 27 bp DNA F24 containing T-tract at center |
| Length: | 17 |
| Consensus: | TGTnTGnnnnTTGnGCA |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 6 3 3 84 T 02 0 0 96 0 G 03 0 0 0 96 T 04 24 24 24 24 n 05 3 3 6 84 T 06 0 5 88 3 G 07 24 24 24 24 n 08 24 24 24 24 n 09 24 24 24 24 n 10 24 24 24 24 n 11 3 6 7 80 T 12 3 3 3 87 T 13 0 0 96 0 G 14 24 24 24 24 n 15 6 3 84 3 G 16 6 84 3 3 C 17 84 6 3 3 A |
| Type: | Heterodimer |
| Binding TFs: | 3jrb_A (Bacterial regulatory protein, Fis family) 3jrb_B (Bacterial regulatory protein, Fis family) |
| Binding Sites: | 3jrb_C 3jrb_D |
| Publications: | Stella S, Cascio D, Johnson R.C. The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes & development 24:814-26 (2010). [Pubmed] |
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