DNA Binding Motif
| Accessions: | ovo (DrosophilaTF 1.1) |
| Names: | ovo |
| Organisms: | Drosophila melanogaster |
| Libraries: | DrosophilaTF 1.1 1 1 Down T.A, Bergman C.M, Su J, Hubbard T.J. Large-scale discovery of promoter motifs in Drosophila melanogaster. PLoS computational biology 3:e7 (2007). [Pubmed] |
| Length: | 9 |
| Consensus: | wgtAACaGw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.5238 0.1905 0 0.2857 w 02 0.0476 0.1905 0.6667 0.0952 g 03 0.1905 0.0952 0.0952 0.619 t 04 1 0 0 0 A 05 1 0 0 0 A 06 0 1 0 0 C 07 0.381 0.2381 0.1429 0.2381 a 08 0 0 1 0 G 09 0.25 0.2 0.1 0.45 w |
| Binding TFs: | ovo (Zinc finger, C2H2 type, Zinc-finger double domain) |
| Binding Sites: | ovo_100 ovo_102 ovo_106 ovo_129 ovo_130 ovo_15rc ovo_180 ovo_19rc ovo_20 ovo_208 ovo_216 ovo_25 ovo_26 ovo_37 ovo_4 ovo_60 ovo_69 ovo_74rc ovo_83 ovo_90 ovo_99 |
| Publications: | Lee S., Garfinkel M. D. Characterization of Drosophila OVO protein DNA binding specificity using random DNA oligomer selection suggests zinc finger degeneration.. Nucleic Acids Res. 28:826-834 (2000). [Pubmed] |
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