DNA Binding Motif
| Accessions: | UP00009A_2 (UniPROBE 20160601) |
| Names: | 2700033K02Rik, 9430015G03Rik, Apolipoprotein AI regulatory protein 1, Aporp1, Arp-1, Arp1, COUP transcription factor 2, COUP-TF II, COUP-TF2, COUP-TFII, COUPTFB, group F, member 2, Nr2f2, nuclear receptor subfamily 2, SVP40, Tcfcoup2, Tfcoup2 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | ckcgysGGGTCAsbyw |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.20 0.44 0.20 0.17 c 02 0.13 0.13 0.42 0.32 k 03 0.24 0.44 0.17 0.14 c 04 0.19 0.19 0.41 0.22 g 05 0.01 0.54 0.18 0.27 y 06 0.01 0.59 0.34 0.06 s 07 0.09 0 0.90 0 G 08 0 0 0.98 0.01 G 09 0 0 0.99 0.01 G 10 0 0 0.01 0.98 T 11 0 0.97 0.01 0.02 C 12 0.94 0 0.05 0 A 13 0.22 0.39 0.25 0.14 s 14 0.15 0.26 0.33 0.26 b 15 0.18 0.29 0.23 0.30 y 16 0.36 0.20 0.14 0.31 w |
| Binding TFs: | UP00009A (Zinc finger, C4 type (two domains)) |
| Binding Sites: | AAGGTCAA AAGGTCAC AAGGTCAT AGAGGTCA AGGGGTCA AGGGTCAA AGGTCAAA AGGTCAAG AGGTCACC AGGTCATC ATGACCCC CAAGGTCA CGAGGTCA CGGGGTCA CTGACCCC GAGGTCAA GAGGTCAC GGGGTCAA GGGGTCAC TGACCCCA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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