DNA Binding Motif

Accessions: 1zq3_P (3D-footprint 20231221)
Names: Homeotic bicoid protein
Organisms: Drosophila melanogaster
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: NMR Solution Structure of the Bicoid Homeodomain Bound to the Consensus DNA Binding Site TAATCC
Length: 8
Consensus: gGGAtTAG
01 13 13 54 16 g
02 0 0 96 0 G
03 0 0 96 0 G
04 96 0 0 0 A
05 13 16 13 54 t
06 0 0 0 96 T
07 96 0 0 0 A
08 0 0 96 0 G
Binding TFs: 1zq3_P (Homeobox domain, Homeodomain leucine-zipper encoding, Homez)
Binding Sites: 1zq3_A
Publications: Baird-Titus J.M, Clark-Baldwin K, Dave V, Caperelli C.A, Ma J, Rance M. The solution structure of the native K50 Bicoid homeodomain bound to the consensus TAATCC DNA-binding site. Journal of molecular biology 356:1137-51 (2006). [Pubmed]

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