DNA Binding Motif

						

			
Accessions: GCM1_CEBPB_2_3 (HumanTF2 1.0)

			
Names: GCM1_CEBPB
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 21
Consensus: rTRcGGGyrgkrTTGCGYAAy
Weblogo: 
PSSM: P0      A      C      G      T
01   1999    325    831    169      r
02    169    176     67   2323      T
03    620     58   1704      2      R
04    324   1738    586    494      c
05    281     52   2323    405      G
06      5    131   2323     84      G
07     34     70   2323     46      G
08    208    944    164   1008      y
09    775    346    862    340      r
10    536    500    781    507      g
11    313    254    838    919      k
12    892    275   1158      0      r
13      0      0      0   2323      T
14      5      3    102   2323      T
15    322      3   2001      4      G
16      0   2323      7     24      C
17     20      4   2323      8      G
18     56   1700      0    623      Y
19   2323     93      0      3      A
20   2323     10      2      4      A
21      5    898    122   1299      y
Type: Heterodimer
Binding TFs: CEBPB_TF2 (bZIP transcription factor, Basic region leucine zipper)
GCM1_TF1 (GCM motif protein)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.