DNA Binding Motif

						

			
Accessions: 1yrn_AB (3D-footprint 20231221)

			
Names: PROTEIN (MAT A1 HOMEODOMAIN)
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA
Length: 17
Consensus: TGTAawTnnTtnCnTCA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03      2      0      1     93      T
04     96      0      0      0      A
05     56     16     16      8      a
06     52      3     14     27      w
07      2      2      2     90      T
08     24     24     24     24      n
09     24     24     24     24      n
10      0      2      2     92      T
11     10      8     16     62      t
12     24     24     24     24      n
13      2     89      3      2      C
14     24     24     24     24      n
15      0      0      0     96      T
16      0     96      0      0      C
17     90      2      2      2      A
Type: Heterodimer
Binding TFs: 1yrn_B (Homeobox domain, Homeobox KN domain)
1yrn_A (Homeobox domain, Homeobox KN domain)
Binding Sites: 1yrn_C
1yrn_D
			
Publications: Li T, Stark M.R, Johnson A.D, Wolberger C. Crystal structure of the MATa1/MAT alpha 2 homeodomain heterodimer bound to DNA. Science (New York, N.Y.) 270:262-9 (1995). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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