DNA Binding Motif
| Accessions: | UP00054A_1 (UniPROBE 20160601) |
| Names: | AI465550, T cell factor-1, T-cell factor 1, T-cell specific, T-cell-specific transcription factor 1, Tcf-1, Tcf1, Tcf7, Transcription factor 7 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 17 |
| Consensus: | twwasWTCAAAGgrahh |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.17 0.20 0.22 0.41 t 02 0.34 0.23 0.14 0.29 w 03 0.30 0.17 0.14 0.38 w 04 0.60 0.05 0.13 0.21 a 05 0.04 0.38 0.53 0.05 s 06 0.73 0.01 0.01 0.26 W 07 0.07 0.01 0 0.92 T 08 0.05 0.82 0.10 0.04 C 09 0.96 0.01 0.01 0.03 A 10 0.96 0 0.02 0.02 A 11 0.94 0.01 0.02 0.04 A 12 0.16 0.06 0.76 0.02 G 13 0.23 0.15 0.52 0.09 g 14 0.56 0.12 0.25 0.06 r 15 0.49 0.21 0.12 0.17 a 16 0.31 0.25 0.13 0.31 h 17 0.33 0.25 0.12 0.30 h |
| Binding TFs: | UP00054A (HMG (high mobility group) box, Domain of unknown function (DUF1898)) |
| Binding Sites: | AACATCAA AATCAAAG ACATCAAA ACTTCAAA ACTTTGAT AGATCAAA AGATCAAT ATCAAAGA ATCAAAGC ATCAAAGG CATCAAAG CCTTTGAA CTTCAAAG CTTTGATA CTTTGATC GATCAAAA GCCTTTGA GGATCAAA TCTTTGAA TGATCAAA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
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