DNA Binding Motif

						

			
Accessions: 5jgh_ADGJ (3D-footprint 20231221)

			
Names: ARS-binding factor 2, mitochondrial
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the mitochondrial DNA packaging protein Abf2p in complex with DNA at 2.6 Angstrom resolution
Length: 83
Consensus: TnATATAnnnnnATAAAnnnnATnATATAnnnnnnTAAAnnnnATnATATnnnnnnnTAAAnnnnnTnATAnnnnnnnnTAAA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02     24     24     24     24      n
03     96      0      0      0      A
04      0      0      0     96      T
05     96      0      0      0      A
06      0      0      0     96      T
07     87      3      3      3      A
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11     24     24     24     24      n
12     24     24     24     24      n
13     87      3      3      3      A
14      3      3      3     87      T
15     96      0      0      0      A
16     96      0      0      0      A
17     96      0      0      0      A
18     24     24     24     24      n
19     24     24     24     24      n
20     24     24     24     24      n
21     24     24     24     24      n
22     78      6      6      6      A
23      0      0      0     96      T
24     24     24     24     24      n
25     96      0      0      0      A
26      0      0      0     96      T
27     96      0      0      0      A
28      0      0      0     96      T
29     87      3      3      3      A
30     24     24     24     24      n
31     24     24     24     24      n
32     24     24     24     24      n
33     24     24     24     24      n
34     24     24     24     24      n
35     24     24     24     24      n
36      0      0      0     96      T
37     96      0      0      0      A
38     96      0      0      0      A
39     96      0      0      0      A
40     24     24     24     24      n
41     24     24     24     24      n
42     24     24     24     24      n
43     24     24     24     24      n
44     75      9      6      6      A
45      0      0      0     96      T
46     24     24     24     24      n
47     96      0      0      0      A
48      0      0      0     96      T
49     87      3      3      3      A
50      0      0      0     96      T
51     24     24     24     24      n
52     24     24     24     24      n
53     24     24     24     24      n
54     24     24     24     24      n
55     24     24     24     24      n
56     24     24     24     24      n
57     24     24     24     24      n
58      3      3      3     87      T
59     96      0      0      0      A
60     96      0      0      0      A
61     96      0      0      0      A
62     24     24     24     24      n
63     24     24     24     24      n
64     24     24     24     24      n
65     24     24     24     24      n
66     24     24     24     24      n
67      0      0      0     96      T
68     24     24     24     24      n
69     96      0      0      0      A
70      0      0      0     96      T
71     78      6      6      6      A
72     24     24     24     24      n
73     24     24     24     24      n
74     24     24     24     24      n
75     24     24     24     24      n
76     24     24     24     24      n
77     24     24     24     24      n
78     24     24     24     24      n
79     24     24     24     24      n
80      0      0      0     96      T
81     96      0      0      0      A
82     96      0      0      0      A
83     96      0      0      0      A
Type: Heterodimer
Binding TFs: 5jgh_A / 5jgh_G (HMG (high mobility group) box, Domain of unknown function (DUF1898))
5jgh_D (HMG (high mobility group) box, Domain of unknown function (DUF1898))
5jgh_J (HMG (high mobility group) box, Domain of unknown function (DUF1898))
			
Publications: Chakraborty A, Lyonnais S, Battistini F, Hospital A, Medici G, Prohens R, Orozco M, Vilardell J, Solà M. DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p. Nucleic Acids Res 45:951-967 (2017). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.