Transcription Factor
| Accessions: | 5jgh_J (3D-footprint 20231221) |
| Names: | ABF2_YEAST, ARS-binding factor 2, mitochondrial |
| Organisms: | Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c) |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Uniprot: | Q02486 |
| Length: | 151 |
| Pfam Domains: | 13-80 HMG (high mobility group) box 13-75 Domain of unknown function (DUF1898) 86-151 HMG (high mobility group) box |
| Sequence: (in bold interface residues) | 1 RTQLRNELIKQGPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEADIKE 60 61 KYISERKKLYSEYQKAKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQLDLMKII 120 121 GDKWQSLDQSIKDKYIQEYKKAIQEYNARYP |
| Interface Residues: | 15, 18, 20, 21, 24, 28, 39, 40, 41, 44, 75, 78, 88, 91, 93, 94, 97, 101, 112, 113, 114, 117 |
| 3D-footprint Homologues: | 1j5n_A, 6jrp_D, 3u2b_C, 1o4x_B, 7m5w_A, 3f27_D, 4s2q_D, 1qrv_A, 4y60_C, 2gzk_A, 1hry_A, 1ckt_A, 2lef_A, 3tmm_A, 3tq6_B |
| Binding Motifs: | 5jgh_ADGJ TnATATAnnnnnATAAAnnnnATnATATAnnnnnnTAAAnnnnATnATATnnnnnnnTAAAnnnnnTnATAnnnnnnnnTAAA 5jgh_J TnATATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAAA |
| Publications: | Chakraborty A, Lyonnais S, Battistini F, Hospital A, Medici G, Prohens R, Orozco M, Vilardell J, Solà M. DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p. Nucleic Acids Res 45:951-967 (2017). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.