Transcription Factor

						

			
Accessions: 5jgh_A (3D-footprint 20231221), 5jgh_G (3D-footprint 20231221), 5jh0_A (3D-footprint 20231221)

			
Names: ABF2_YEAST, ARS-binding factor 2, mitochondrial
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: Q02486
Length: 156
Pfam Domains:     17-79 Domain of unknown function (DUF1898)
    17-84 HMG (high mobility group) box
   90-155 HMG (high mobility group) box
Sequence: 
(in bold interface residues)		   1 KASKRTQLRNELIKQGPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNLEA   60
  61 DIKEKYISERKKLYSEYQKAKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQLDL  120
 121 MKIIGDKWQSLDQSIKDKYIQEYKKAIQEYNARYPL
Interface Residues: 19, 22, 24, 25, 28, 32, 43, 44, 45, 48, 79, 82, 92, 95, 97, 98, 101, 105, 116, 117, 118, 121
3D-footprint Homologues: 4y60_C, 2gzk_A, 1j5n_A, 6jrp_D, 3u2b_C, 1o4x_B, 7m5w_A, 3f27_D, 4s2q_D, 1qrv_A, 1hry_A, 1ckt_A, 3tmm_A, 2lef_A, 3tq6_B
Binding Motifs: 5jgh_ADGJ TnATATAnnnnnATAAAnnnnATnATATAnnnnnnTAAAnnnnATnATATnnnnnnnTAAAnnnnnTnATAnnnnnnnnTAAA
5jh0_AD AATAnnnnnnnATATAATAnnnAATAnnnnnnnnTATaAT
			
Publications: Chakraborty A, Lyonnais S, Battistini F, Hospital A, Medici G, Prohens R, Orozco M, Vilardell J, Solà M. DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p. Nucleic Acids Res 45:951-967 (2017). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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