DNA Binding Motif

						

			
Accessions: 5krb_BG (3D-footprint 20231221)

			
Names: Nuclear receptor subfamily 6 group A member 1
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: GCNF DNA Binding Domain - Oct4 DR0 Complex
Length: 11
Consensus: GGTCAaGGnCA
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      0      0     96      0      G
03      0      0      0     96      T
04      0     96      0      0      C
05     80      0      8      8      A
06     64      8      8     16      a
07      0      0     96      0      G
08      0      0     96      0      G
09     24     24     24     24      n
10      0     80      8      8      C
11     72      8      8      8      A
Type: Heterodimer
Binding TFs: 5krb_B (Zinc finger, C4 type (two domains))
5krb_G (Zinc finger, C4 type (two domains))
Binding Sites: 5krb_A
5krb_E
			
Publications: Weikum ER, Tuntland ML, Murphy MN, Ortlund EA. A Structural Investigation into Oct4 Regulation by Orphan Nuclear Receptors, Germ Cell Nuclear Factor (GCNF), and Liver Receptor Homolog-1 (LRH-1). J Mol Biol : (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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