DNA Binding Motif

						

			
Accessions: 1ram_AB (3D-footprint 20231221)

			
Names: PROTEIN (TRANSCRIPTION FACTOR NF-KB P65)
Organisms: Mus musculus
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER
Length: 8
Consensus: amnTTCCA
Weblogo: 
PSSM: P0      A      C      G      T
01     52     19      8     17      a
02     43     26     17     10      m
03     24     24     24     24      n
04      0      0      0     96      T
05      0      0      0     96      T
06      0     96      0      0      C
07      0     96      0      0      C
08     80      8      8      0      A
Binding TFs: 1ram_A / 1ram_B (Rel homology domain (RHD))
Binding Sites: 1ram_C / 1ram_D
			
Publications: Chen Y.Q, Ghosh S, Ghosh G. A novel DNA recognition mode by the NF-kappa B p65 homodimer. Nature structural biology 5:67-73 (1998). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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