DNA Binding Motif

Accessions: MA2165.1 (JASPAR 2024)
Names: elt-1
Organisms: Caenorhabditis elegans
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ChIP-seq
Length: 8
Consensus: TCTTATCT
Weblogo:
PSSM: P0 A C G T
01 66 88 76 492 T
02 26 569 64 63 C
03 21 20 20 661 T
04 43 28 20 631 T
05 656 22 22 22 A
06 7 8 6 701 T
07 17 679 10 16 C
08 55 21 28 618 T
Binding TFs: P28515
Binding Sites: MA2165.1.1
MA2165.1.12 / MA2165.1.17
MA2165.1.5 / MA2165.1.8
MA2165.1.18
MA2165.1.4
MA2165.1.20
MA2165.1.7
MA2165.1.11 / MA2165.1.9
MA2165.1.10
MA2165.1.13
MA2165.1.14 / MA2165.1.19 / MA2165.1.6
MA2165.1.15
MA2165.1.16
MA2165.1.2
MA2165.1.3
Publications: Shim YH. elt-1, a gene encoding a Caenorhabditis elegans GATA transcription factor, is highly expressed in the germ lines with msp genes as the potential targets. Mol Cells 9:535-41 (1999). [Pubmed]

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