DNA Binding Motif

						

			
Accessions: HOXB2_ELK3_1 (HumanTF2 1.0)

			
Names: HOXB2_ELK3
Organisms: Homo sapiens
Libraries: HumanTF2 1.0 1
1 Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]
Notes: Site type: heterodimeric; Experiment type: CAP-SELEX
Length: 14
Consensus: aCCGGAAGTmrTtA
Weblogo: 
PSSM: P0      A      C      G      T
01    178      9     60     35      a
02      9    227     12      2      C
03     11    239      0      7      C
04      3      1    239      4      G
05      0      0    239      3      G
06    239      6      6      4      A
07    239      6      0     15      A
08      5     15    239      0      G
09      0     11     16    239      T
10     89    150     49     29      m
11    133     35    105     11      r
12      6     23     32    239      T
13     29     82     23    239      t
14    239     20      1     29      A
Type: Heterodimer
Binding TFs: ELK3_TF2 (Ets-domain)
HOXB2_TF1 (Homeobox domain)
			
Publications: Jolma A, Yin Y, Nitta KR, Dave K, Popov A, Taipale M, Enge M, Kivioja T, Morgunova E, Taipale J. DNA-dependent formation of transcription factor pairs alters their binding specificity. Nature 527:384-8 (2015). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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