DNA Binding Motif
| Accessions: | UP00386A_1 (UniPROBE 20160601) |
| Names: | HLH-25 |
| Organisms: | Caenorhabditis elegans |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 16 |
| Consensus: | rrgrCGCGTGTCCywk |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.38 0.18 0.26 0.17 r 02 0.32 0.19 0.32 0.17 r 03 0.14 0.17 0.48 0.21 g 04 0.39 0.05 0.53 0.02 r 05 0.01 0.98 0.01 0.01 C 06 0.21 0.01 0.75 0.02 G 07 0 0.89 0 0.11 C 08 0.15 0 0.84 0 G 09 0 0.01 0 0.99 T 10 0 0 0.99 0 G 11 0.01 0 0.10 0.89 T 12 0.01 0.94 0.01 0.05 C 13 0.01 0.85 0.01 0.13 C 14 0.11 0.52 0.08 0.28 y 15 0.31 0.23 0.17 0.29 w 16 0.23 0.15 0.32 0.31 k |
| Binding TFs: | UP00386A (Helix-loop-helix DNA-binding domain) |
| Binding Sites: | ACACGCGC ACACGCGT ACATGCGC ACATGCGT ACCACGCG ACGCATGG ACGCGTGG CACGCATG CACGCGTA CACGCGTG CACGTGTC CATGCGTA CCACGCGC CCATGCGC CGCATGGC CGCATGTC CGCGTGGC CGCGTGTC CGTGTGTC GCGTGTCC |
| Publications: | Grove C.A, De Masi F, Barrasa M.I, Newburger D.E, Alkema M.J, Bulyk M.L, Walhout A.J. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138:314-27 (2009). [Pubmed] |
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