DNA Binding Motif

						

			
Accessions: 1zs4_ACD (3D-footprint 20231221)

			
Names: Regulatory protein CII
Organisms: Enterobacteria phage lambda, Escherichia phage lambda
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Structure of bacteriophage lambda cII protein in complex with DNA
Length: 16
Consensus: GTTGCgnnnnTTTGCa
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      0      0      0     96      T
03      0      0      0     96      T
04      0      0     96      0      G
05      0     91      0      5      C
06     16      5     56     19      g
07     24     24     24     24      n
08     24     24     24     24      n
09     24     24     24     24      n
10     24     24     24     24      n
11      7      5      5     79      T
12      0      6      0     90      T
13      0      0      0     96      T
14      0      0     96      0      G
15      0     84      1     11      C
16     62     11     11     12      a
Type: Heterodimer
Binding TFs: 1zs4_A (Bacteriophage CII protein)
1zs4_C (Bacteriophage CII protein)
1zs4_D (Bacteriophage CII protein)
Binding Sites: 1zs4_T
1zs4_U
			
Publications: Jain D, Kim Y, Maxwell K.L, Beasley S, Zhang R, Gussin G.N, Edwards A.M, Darst S.A. Crystal structure of bacteriophage lambda cII and its DNA complex. Molecular cell 19:259-69 (2005). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.