DNA Binding Motif

						

			
Accessions: UP00002A_2 (UniPROBE 20160601)

			
Names: 5730497N03Rik, HF-1b, HF1-b, Sp4, trans-acting transcription factor 4, Transcription factor Sp4
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 15
Consensus: ywwAGGCGTGkCyhd
Weblogo: 
PSSM: P0      A      C      G      T
01   0.15   0.31   0.24   0.30      y
02   0.49   0.09   0.16   0.25      w
03   0.50   0.06   0.08   0.36      w
04   0.76   0.02   0.21   0.01      A
05   0.01   0.03   0.95   0.02      G
06   0.01   0.02   0.95   0.03      G
07   0.06   0.83   0.05   0.05      C
08   0.01   0.02   0.93   0.04      G
09   0.01   0.02   0.15   0.82      T
10   0.13   0.03   0.79   0.04      G
11   0.14   0.18   0.43   0.25      k
12   0.04   0.81   0.03   0.12      C
13   0.16   0.41   0.12   0.31      y
14   0.29   0.26   0.20   0.25      h
15   0.25   0.12   0.36   0.26      d
Binding TFs: UP00002A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger)
Binding Sites: CCCGCCCC
AACGCCCC
ACCGCCCC
ACGCCCAC
ACGCCCAT
ACGCCCCC
ACGCCCCT
AGGGGCGG
AGGGGGCG
CACGCCCA
CACGCCCC
CCACGCCC
CCCCGCCC
CCCGCCCA
CCGCCCAC
CGCCCACC
CGCCCCCA
CGCCCCCC
GGGGCGTA
AGTGGGCG
			
Publications: Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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