DNA Binding Site
| Accessions: | CCCCGCCC (UniPROBE 20160601), MA0039.5.1 (JASPAR 2024), MA0039.5.11 (JASPAR 2024), MA0039.5.12 (JASPAR 2024), MA0039.5.19 (JASPAR 2024), MA0039.5.3 (JASPAR 2024), MA0039.5.9 (JASPAR 2024), MA1513.2.1 (JASPAR 2024), MA1513.2.10 (JASPAR 2024), MA1513.2.12 (JASPAR 2024), MA1513.2.2 (JASPAR 2024), MA1513.2.3 (JASPAR 2024), MA1513.2.4 (JASPAR 2024), MA1513.2.5 (JASPAR 2024), MA1513.2.6 (JASPAR 2024), MA1513.2.7 (JASPAR 2024), MA1513.2.8 (JASPAR 2024) |
| Organisms: | Mus musculus, Plasmodium falciparum, Homo sapiens |
| Libraries: | UniPROBE 20160601 1, JASPAR 2024 2 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 8 |
| Sequence: | CCCCGCCC |
| Type: | Heterodimer |
| Binding TFs: | Q9UIH9 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00002A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) O43474 (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00443B (AP2 domain) UP00587E (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00594D (Homeobox domain) UP00599A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00599C (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00600A (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) UP00600B (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) O43474 Q9UIH9 |
| Binding Motifs: | UP00002A_1 kgymmCGCCCCCyysyc UP00002A_2 ywwAGGCGTGkCyhd UP00443B_1 mytytyayrTmTTGCCwhcmbmm UP00587E_1 tmwyyytCCCCGCCCythyata UP00594D_1 yagmhskaymwraawmsmcwaw UP00599A_1 wsdymysCCCCrCCCmsyygrm UP00599A_2 wwtwwrrCCCCGCCCywymmsy UP00599C_1 wttwwcCmCGCCCmcCCattcys UP00599C_2 wwhywmcCCGCCCmmCcrbksws UP00600A_1 ythdwmmmCGCCCCCybskyam UP00600B_1 yywdacmmCGCCCCCybskbrm MA0039.5 CCCCACCC MA1513.2 cCCCGCCC |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] |
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