DNA Binding Motif

						

			
Accessions: 5d4r_AB (3D-footprint 20231221)

			
Names: Arabinose metabolism transcriptional repressor
Organisms: Bacillus subtilis, strain 168
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal Structure of AraR(DBD) in complex with operator ORE1
Length: 11
Consensus: TGtnCGTaCCa
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0      0     96      T
02      0      0     96      0      G
03     12     12     10     62      t
04     24     24     24     24      n
05      0     96      0      0      C
06      0      0     96      0      G
07      0      9      0     87      T
08     54     16     16     10      a
09      0     96      0      0      C
10      1     75      0     20      C
11     62     18      8      8      a
Type: Heterodimer
Binding TFs: 5d4r_A (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain, HTH domain)
5d4r_B (Bacterial regulatory proteins, gntR family, DeoR-like helix-turn-helix domain, HTH domain)
Binding Sites: 5d4r_T
5d4r_U
			
Publications: Jain D, Narayanan N, Nair DT. Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators. J Biol Chem 291:1235-42 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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