DNA Binding Motif

						

			
Accessions: 3iyd_H (3D-footprint 20231221)

			
Names: Catabolite gene activator
Organisms: Escherichia coli, strain K12
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Three-dimensional EM structure of an intact activator-dependent transcription initiation complex
Length: 11
Consensus: AnnnnTGTGaT
Weblogo: 
PSSM: P0      A      C      G      T
01     90      3      3      0      A
02     24     24     24     24      n
03     24     24     24     24      n
04     24     24     24     24      n
05     24     24     24     24      n
06      0      0      0     96      T
07      7      3     76     10      G
08      3     15      6     72      T
09      3      3     83      7      G
10     49     19     17     11      a
11      0      0      4     92      T
Binding TFs: 3iyd_H (Cyclic nucleotide-binding domain, Bacterial regulatory proteins, crp family, Crp-like helix-turn-helix domain)
Binding Sites: 3iyd_I
3iyd_J
			
Publications: Hudson B.P, Quispe J, Lara-González S, Kim Y, Berman H.M, Arnold E, Ebright R.H, Lawson C.L. Three-dimensional EM structure of an intact activator-dependent transcription initiation complex. Proceedings of the National Academy of Sciences of the United States of America 106:19830-5 (2009). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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