DNA Binding Motif

						

			
Accessions: 6jgx_B (3D-footprint 20231221)

			
Names: CadR
Organisms: Pseudomonas putida
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of the transcriptional regulator CadR from P. putida in complex with Cadmium(II) and DNA
Length: 9
Consensus: cncTntnGT
Weblogo: 
PSSM: P0      A      C      G      T
01     19     62      9      6      c
02     24     24     24     24      n
03     14     52     21      9      c
04      0      4      0     92      T
05     24     24     24     24      n
06      9     19      9     59      t
07     24     24     24     24      n
08      0      0     96      0      G
09      4      2      4     86      T
Binding TFs: 6jgx_B (MerR family regulatory protein, MerR, DNA binding, MerR HTH family regulatory protein)
Binding Sites: 6jgx_C
6jgx_D
			
Publications: Liu X, Hu Q, Yang J, Huang S, Wei T, Chen W, He Y, Wang D, Liu Z, Wang K, Gan J, Chen H. Selective cadmium regulation mediated by a cooperative binding mechanism in CadR. Proc Natl Acad Sci U S A 116:20398-20403 (2019). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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