DNA Binding Motif

Accessions: MA1966.2 (JASPAR 2024)
Names: TFAP4::ETV1
Organisms: Homo sapiens
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: HT-SELEX
Length: 13
Consensus: sCGGAwgCAGsTG
Weblogo:
PSSM: P0 A C G T
01 310 1541 1384 176 s
02 498 2925 183 101 C
03 34 22 2925 32 G
04 41 51 2925 64 G
05 2925 59 124 71 A
06 2925 82 145 1346 w
07 706 359 1821 39 g
08 20 2925 16 117 C
09 2925 63 323 99 A
10 80 572 2925 491 G
11 722 1443 1482 107 s
12 127 316 188 2925 T
13 17 23 2925 88 G
Type: Heterodimer
Binding TFs: Q01664 (Helix-loop-helix DNA-binding domain)
Q01664
Publications: Guturu H, Doxey AC, Wenger AM, Bejerano G. Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements. Philos Trans R Soc Lond B Biol Sci 368:20130029 (2013). [Pubmed]

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