DNA Binding Motif

						

			
Accessions: MA2001.1 (JASPAR 2024)

			
Names: Six4
Organisms: Mus musculus
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Length: 11
Consensus: gwAACCTGAbm
Weblogo: 
PSSM: P0      A      C      G      T
01    701    471   2545    574      g
02   1495    629    779   1388      w
03   4063     99     57     72      A
04   3970    112     62    147      A
05    209   3506    115    461      C
06    480   3352    114    345      C
07    202    268    210   3611      T
08    124    146   3906    115      G
09   4124     62     52     53      A
10    835   1112   1239   1105      b
11   1344   1402    686    859      m
Type: Heterodimer
Binding TFs: Q61321 (Homeobox domain, Homeobox KN domain)
Q61321
Binding Sites: MA2001.1.1 / MA2001.1.2
MA2001.1.10 / MA2001.1.14
MA2001.1.11 / MA2001.1.15
MA2001.1.12 / MA2001.1.17
MA2001.1.13 / MA2001.1.18
MA2001.1.14 / MA2001.1.19
MA2001.1.15 / MA2001.1.20
MA2001.1.16
MA2001.1.17
MA2001.1.18
MA2001.1.19
MA2001.1.2 / MA2001.1.3
MA2001.1.20
MA2001.1.3 / MA2001.1.4
MA2001.1.4 / MA2001.1.7
MA2001.1.5 / MA2001.1.8
MA2001.1.6 / MA2001.1.9
MA2001.1.11 / MA2001.1.7
MA2001.1.12 / MA2001.1.8
MA2001.1.13 / MA2001.1.9
MA2001.1.1
MA2001.1.10
MA2001.1.16
MA2001.1.5
MA2001.1.6
			
Publications: Himeda CL, Ranish JA, Angello JC, Maire P, Aebersold R, Hauschka SD. Quantitative proteomic identification of six4 as the trex-binding factor in the muscle creatine kinase enhancer. Mol Cell Biol 24:2132-43 (2004). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.