Transcription Factor
| Accessions: | UP00193A (UniPROBE 20160601) |
| Names: | BC049711, Gm39, LOC194738, MGC58663, reproductive homeobox 11, Rhox11 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Description: | reproductive homeobox 11 |
| Length: | 93 |
| Pfam Domains: | 20-73 Homeobox domain |
| Sequence: (in bold interface residues) | 1 ETSKVAETSEQSLFRIPRKAYRFTPGQLWELQAVFVENQYPDALKRKELAGLLNVDEQKI 60 61 KDWFNNKRAKYRKIQREILGGKNITPTQEELRM |
| Interface Residues: | 15, 18, 19, 20, 21, 22, 58, 59, 61, 62, 65, 66, 69, 70, 73, 82 |
| 3D-footprint Homologues: | 2ld5_A, 7psx_B, 2r5y_A, 4xrs_G, 2d5v_B, 6m3d_C, 4j19_B, 2lkx_A, 1mnm_C, 6a8r_A, 1le8_B, 1k61_B, 5jlw_D, 7q3o_C, 1le8_A, 7xrc_C, 1ig7_A, 2xsd_C, 1e3o_C, 1au7_A, 1nk2_P, 1fjl_B, 3rkq_B, 1zq3_P, 6es3_K, 1b72_A, 3d1n_M, 1o4x_A, 5zfz_A, 4cyc_A, 1du0_A, 5flv_I, 3l1p_A, 1puf_A, 1jgg_B, 5zjt_E, 3a01_E, 2h1k_B, 5hod_A, 3lnq_A, 1puf_B, 4qtr_D, 3cmy_A, 2hdd_A, 2hos_A |
| Binding Motifs: | UP00193A_1 amkmyGCTGTwAwrsrw UP00193A_2 arkmcGCTGTwAwgsrw |
| Binding Sites: | AATACAGC AATACATC AGCTGTAA ATAACAGC ATACAGCG ATTACACC ATTACAGC ATTACATC CGCTGTAA CGCTGTTA GATGTTAA GCTGTAAC GCTGTATA GCTGTTAA GCTGTTCA GGCTGTTA GGTGTAAA GGTGTTAA TAACAGCA TGCTGTAA |
| Publications: | Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.