DNA Binding Motif

						

			
Accessions: UP00193A_2 (UniPROBE 20160601)

			
Names: BC049711, Gm39, LOC194738, MGC58663, reproductive homeobox 11, Rhox11
Organisms: Mus musculus
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Length: 17
Consensus: arkmcGCTGTwAwgsrw
Weblogo: 
PSSM: P0      A      C      G      T
01   0.50   0.14   0.14   0.22      a
02   0.28   0.24   0.30   0.17      r
03   0.18   0.10   0.38   0.33      k
04   0.33   0.27   0.19   0.21      m
05   0.14   0.56   0.07   0.23      c
06   0.04   0.01   0.93   0.02      G
07   0.09   0.78   0.13      0      C
08   0.01      0   0.01   0.98      T
09   0.03      0   0.95   0.02      G
10   0.01   0.01      0   0.98      T
11   0.60   0.01      0   0.39      w
12   0.80   0.03   0.03   0.14      A
13   0.53   0.10   0.02   0.35      w
14   0.24   0.13   0.40   0.23      g
15   0.21   0.29   0.35   0.15      s
16   0.28   0.19   0.44   0.09      r
17   0.42   0.15   0.09   0.33      w
Binding TFs: UP00193A (Homeobox domain)
Binding Sites: AATACAGC
AATACATC
AGCTGTAA
ATAACAGC
ATACAGCG
ATTACACC
ATTACAGC
ATTACATC
CGCTGTAA
CGCTGTTA
GATGTTAA
GCTGTAAC
GCTGTATA
GCTGTTAA
GCTGTTCA
GGCTGTTA
GGTGTAAA
GGTGTTAA
TAACAGCA
TGCTGTAA
			
Publications: Berger M.F, Badis G, Gehrke A.R, Talukder S, Philippakis A.A, Peña-Castillo L, Alleyne T.M, Mnaimneh S, Botvinnik O.B, Chan E.T, Khalid F, Zhang W, Newburger D, Jaeger S.A, Morris Q.D, Bulyk M.L, Hughes T.R. Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. Cell 133:1266-76 (2008). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.