Transcription Factor
| Accessions: | T25002 (AthalianaCistrome v4_May2016), Q9FF87 (JASPAR 2024) |
| Names: | AT5G23930, T25002;, Q9FF87_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:mTERF |
| Length: | 457 |
| Pfam Domains: | 91-428 mTERF |
| Sequence: (in bold interface residues) | 1 MFSLILHGGRRSRELHQWRNLNLLLQNSSAFTESFSSVVTTTKDLSLEDERKRKTFTVSY 60 61 LIDSLGLTTKLAESISMKANFDEKGNPDSVLKLLRSYGFKDSQISSIISTYPRFLIENPE 120 121 KTLRAKLHFLKLNGASSSELTEIVSKVPKILGKRGGKWISHYYDYVKEILQDQDSSSSSS 180 181 KRKQTNRNRNVSVLRKLGVPQRLLLNLLISRAKPVCGKERFEESVKKIVEMGFDPKSPKF 240 241 VNALYVFYELSDKTIEEKVNAYIRLGLSVNEVWAVFKKWPFSLKYSEKNIIQKFETLKRV 300 301 GLTKEEVCLVVKKYPECVGTSEEKIVKSVKTFLELGFTKDEVLMIIKRHPQCIGLAADSV 360 361 KKKTEFLVKTMGWPLKVVASTPIVLGFSLEKFVLPRCNVIKALMSNGLIGEMPAISSVLT 420 421 SPKLKFLKLFVEKHQDVLPELNSIFTGDSILINKIAL |
| Interface Residues: | 279, 281, 313, 316, 320, 347, 348, 351 |
| 3D-footprint Homologues: | 3mva_O |
| Binding Motifs: | M0492 cdccgccrccdcCGCCGCCr UN0357.1 ymGCCGCCry UN0357.2 mGCCGCCr |
| Binding Sites: | UN0357.2.3 UN0357.2.15 / UN0357.2.16 / UN0357.2.19 UN0357.2.13 / UN0357.2.20 UN0357.1.1 UN0357.1.10 / UN0357.1.11 UN0357.1.12 UN0357.1.13 UN0357.1.14 UN0357.1.15 UN0357.1.16 UN0357.1.17 / UN0357.1.18 / UN0357.1.6 / UN0357.1.8 UN0357.1.19 UN0357.1.2 UN0357.1.20 UN0357.1.3 UN0357.1.4 / UN0357.1.5 UN0357.1.7 UN0357.1.9 UN0357.2.10 / UN0357.2.11 / UN0357.2.12 / UN0357.2.14 / UN0357.2.17 / UN0357.2.18 / UN0357.2.2 / UN0357.2.6 / UN0357.2.7 / UN0357.2.8 / UN0357.2.9 UN0357.2.4 / UN0357.2.5 UN0357.2.1 |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.