DNA Binding Motif

						

			
Accessions: M0492 (AthalianaCistrome v4_May2016)

			
Names: AT5G23930.DAP, T25002;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Length: 20
Consensus: cdccgccrccdcCGCCGCCr
Weblogo: 
PSSM: P0      A      C      G      T
01    127    272     69    123      c
02    165     75    201    150      d
03     79    349     42    121      c
04    108    332     53     98      c
05    136     60    292    103      g
06     59    388     52     92      c
07     88    378     47     78      c
08    183     50    251    107      r
09     50    358     44    139      c
10     96    372      6    117      c
11    200     30    200    161      d
12     24    387     56    124      c
13    138    430     12     11      C
14     36      1    509     45      G
15      0    585      3      3      C
16     31    558      0      2      C
17     62      0    514     15      G
18      0    524      5     62      C
19      8    572      0     11      C
20    205      0    322     64      r
Binding TFs: T25002 (mTERF)
			
Publications: O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.