Transcription Factor

Accessions: O65683 (JASPAR 2024), T20136 (AthalianaCistrome v4_May2016), AtbZIP11 (EEADannot 2023-12-22)
Names: AtbZIP11, bZIP transcription factor 11, bZIP transcription factor ATB2, BZP11_ARATH, G-box-binding factor 6, AT4G34590, GBF6, T20136;, O65683;BZP11_ARATH;AT4G34590.1
Organisms: Arabidopsis thaliana
Libraries: JASPAR 2024 1, AthalianaCistrome v4_May2016 2, EEADannot 2023-12-22 3
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
3 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP
Length: 159
Pfam Domains: 25-67 Basic region leucine zipper
27-68 bZIP transcription factor
Sequence:
(in bold interface residues)
1 MESSSSGTTSSTIQTSSGSEESLMEQRKRKRMLSNRESARRSRMKKQKLLDDLTAQVNHL 60
61 KKENTEIVTSVSITTQHYLTVEAENSVLRAQLDELNHRLQSLNDIIEFLDSSNNNNNNNM 120
121 GMCSNPLVGLECDDFFVNQMNMSYIMNQPLMASSDALMY
Interface Residues: 31, 35, 36, 38, 39, 42, 43
3D-footprint Homologues: 7x5e_E, 5vpe_D, 1dh3_C, 5t01_B
Binding Motifs: M0191 / MA1334.1 tGCCACGTCAkCwwh
M0222 dwwgmTgACGTGkma
EEAD0094 tGmCACGTsd
EEAD0095 TGcTGAsktRGCrr
EEAD0108 tGmCACGTsdb
EEAD0109 ycacGTCAkCa
EEAD0110 dwwgrhsACGTGKCa
EEAD0111 TGmTGACkwgg
EEAD0112 hsACGTGkCa
EEAD0113 TCmTCaTCAtCaTC
MA1334.2 tGCCACGTCAkCw
Binding Sites: MA1334.1.1
MA1334.1.10
MA1334.1.11
MA1334.1.12 / MA1334.1.16
MA1334.1.13
MA1334.1.14
MA1334.1.15
MA1334.1.17
MA1334.1.18
MA1334.1.19
MA1334.1.2
MA1334.1.20
MA1334.1.3
MA1334.1.4
MA1334.1.5
MA1334.1.6
MA1334.1.7
MA1334.1.8
MA1334.1.9
MA1334.2.1
MA1334.2.10
MA1334.2.11
MA1334.2.12
MA1334.2.13
MA1334.2.14
MA1334.2.15
MA1334.2.16
MA1334.2.17
MA1334.2.18
MA1334.2.19
MA1334.2.2
MA1334.2.20
MA1334.2.3
MA1334.2.4
MA1334.2.5
MA1334.2.6
MA1334.2.7
MA1334.2.8
MA1334.2.9
Publications: Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.