Transcription Factor
| Accessions: | UP00284A (UniPROBE 20160601) |
| Names: | Putative 50.3 kDa zinc finger protein in PAK1-RPS26B intergenic region, Yer130c |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P39959 |
| Description: | Hypothetical protein |
| Length: | 105 |
| Pfam Domains: | 52-74 Zinc finger, C2H2 type 53-74 C2H2-type zinc finger 53-72 Zinc-finger of C2H2 type 65-90 Zinc-finger double domain 80-102 C2H2-type zinc finger 80-102 Zinc finger, C2H2 type 80-100 Zinc-finger of C2H2 type |
| Sequence: (in bold interface residues) | 1 EPSSSPSPSAPSPSVQSSSSSHGLVVRKKTGSMQKTRGRKPSLIPDASKQFGCEFCDRRF 60 61 KRQEHLKRHVRSLHMCEKPFTCHICNKNFSRSDNLNQHVKTHASL |
| Interface Residues: | 34, 36, 37, 40, 58, 60, 61, 62, 63, 64, 65, 67, 68, 69, 72, 73, 76, 77, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101 |
| 3D-footprint Homologues: | 1ubd_C, 1tf3_A, 8cuc_F, 7y3l_A, 3uk3_C, 2kmk_A, 5und_A, 2gli_A, 8h9h_G, 1llm_D, 7txc_E, 6blw_A, 5k5l_F, 7ysf_A, 6wmi_A, 5v3j_F, 4x9j_A, 2i13_A, 1mey_C, 7w1m_H, 5kkq_D, 2wbs_A, 1f2i_J, 7eyi_G, 5yel_A, 5ei9_F, 2jpa_A, 8ssu_A, 6ml4_A, 5kl3_A, 2drp_D, 8gn3_A, 1g2f_F, 7n5w_A, 5k5i_A, 1tf6_A, 6u9q_A, 4m9v_C, 2lt7_A, 8ssq_A, 6e94_A, 7y3m_I, 1yuj_A, 5yj3_D |
| Binding Motifs: | UP00284A_1 hhryrAAATAGGGGyagsww |
| Binding Sites: | AAAAGGGG AAAGGGGG AAGGGGGA AAGGGGGG AATAGGGG ACCCCTAT AGAGGGGG AGGGGGAA AGGGGGAG AGGGGGGA ATAGGGGA ATAGGGGC ATAGGGGG ATTAGGGG CCCCCTAA CCCCTAAA CCCCTATA CCCCTATC CCCCTTTA CCCTATTC |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.