DNA Binding Motif
| Accessions: | UP00284A_1 (UniPROBE 20160601) |
| Names: | Putative 50.3 kDa zinc finger protein in PAK1-RPS26B intergenic region, Yer130c |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Length: | 20 |
| Consensus: | hhryrAAATAGGGGyagsww |
| Weblogo: |  |
| PSSM: | P0 A C G T 01 0.27 0.35 0.13 0.25 h 02 0.27 0.25 0.20 0.28 h 03 0.31 0.18 0.27 0.24 r 04 0.24 0.25 0.19 0.31 y 05 0.33 0.13 0.34 0.20 r 06 0.68 0.05 0.14 0.13 A 07 0.70 0.01 0.07 0.22 A 08 0.94 0 0 0.05 A 09 0.11 0 0 0.89 T 10 0.99 0 0.01 0 A 11 0.01 0 0.99 0 G 12 0 0 0.99 0 G 13 0.05 0 0.95 0 G 14 0.01 0 0.98 0.01 G 15 0.04 0.34 0.23 0.39 y 16 0.53 0.16 0.13 0.18 a 17 0.22 0.15 0.52 0.11 g 18 0.24 0.28 0.29 0.19 s 19 0.27 0.17 0.22 0.34 w 20 0.35 0.18 0.18 0.29 w |
| Binding TFs: | UP00284A (Zinc finger, C2H2 type, Zinc-finger of C2H2 type, Zinc-finger double domain, C2H2-type zinc finger) |
| Binding Sites: | AAAAGGGG AAAGGGGG AAGGGGGA AAGGGGGG AATAGGGG ACCCCTAT AGAGGGGG AGGGGGAA AGGGGGAG AGGGGGGA ATAGGGGA ATAGGGGC ATAGGGGG ATTAGGGG CCCCCTAA CCCCTAAA CCCCTATA CCCCTATC CCCCTTTA CCCTATTC |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
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