Transcription Factor
Accessions: | Q9FY74 (JASPAR 2024) |
Names: | AtCAMTA1, AtSR2, Calmodulin-binding transcription activator 1, CMTA1_ARATH, EICBP.b, Ethylene-induced calmodulin-binding protein b, Signal-responsive protein 2 |
Organisms: | Arabidopsis thaliana |
Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
Uniprot: | Q9FY74 |
Length: | 1007 |
Pfam Domains: | 21-139 CG-1 domain 601-672 Ankyrin repeats (3 copies) 645-677 Ankyrin repeat 824-841 IQ calmodulin-binding motif 846-865 IQ calmodulin-binding motif |
Sequence: (in bold interface residues) | 1 MVDRRSFGSITPPLQLDMEQLLSEAQHRWLRPTEICEILQNYHKFHIASESPTRPASGSL 60 61 FLFDRKVLRYFRKDGHNWRKKKDGKTIREAHEKLKVGSIDVLHCYYAHGEANENFQRRCY 120 121 WMLEQHLMHIVFVHYLEVKGNRTSIGMKENNSNSVNGTASVNIDSTASPTSTLSSLCEDA 180 181 DTGDSQQASSVLRPSPEPQTGNRYGWTPAPGMRNVSQVHGNRVRESDSQRLVDVRALDTV 240 241 GNSLTRFHDQPYCNNLLTQMQPSNTDSMLVEENSEKGGRLKAEHIRNPLQTQFNWQDDTD 300 301 LALFEQSAQDNFETFSSLLGSENLQPFGISYQAPPSNMDSEYMPVMKILRRSEDSLKKVD 360 361 SFSKWAIKELGEMEDLQMQSSRGDIAWTTVECETAAAGISLSPSLSEDQRFTIVDFWPKS 420 421 AKTDAEVEVMVIGTFLLSPQEVTKYNWSCMFGEVEVPAEILVDGVLCCHAPPHTAGHVPF 480 481 YVTCSNRFACSEVREFDFLSGSTQKINATDVYGTYTNEASLQLRFEKMLAHRDFVHEHHI 540 541 FEDVGDKRRQISKIMLLKEEKEYLLPGTYQRDSTKQEPKGQLFRELFEEELYIWLIHKVT 600 601 EEGKGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVNINFRDANGWSALHWAAFSGREE 660 661 TVAVLVSLGADAGALTDPSPELPLGKTAADLAYANGHRGISGFLAESSLTSYLEKLTVDS 720 721 KENSPANSCGEKAVQTVSERTAAPMTYGDVPEKLSLKDSLTAVRNATQAADRLHQVFRMQ 780 781 SFQRKQLCDIGDDEKIDISDQLAVSFAASKTKNPGQGDVSLSCAATHIQKKYRGWKKRKE 840 841 FLLIRQRIVKIQAHVRGHQVRKQYRTVIWSVGLLEKIILRWRRKGNGLRGFKRNAVAKTV 900 901 EPEPPVSAICPRIPQEDEYDYLKEGRKQTEERLQKALTRVKSMVQYPEARDQYRRLLTVV 960 961 EGFRENEASSSASINNKEEEAVNCEEDDFIDIESLLNDDTLMMSISP |
Interface Residues: | 275, 910, 911, 913, 914, 927 |
3D-footprint Homologues: | 6g3b_A, 5fmf_V |
Binding Motifs: | MA1197.1 aAarCGCGTkdr MA1197.2 AarCGCGTk |
Binding Sites: | MA1197.1.1 MA1197.1.10 MA1197.1.11 MA1197.1.12 MA1197.1.13 MA1197.1.14 MA1197.1.15 MA1197.1.16 / MA1197.1.4 MA1197.1.17 / MA1197.1.18 MA1197.1.19 MA1197.1.2 MA1197.1.20 MA1197.1.3 MA1197.1.5 MA1197.1.6 MA1197.1.7 MA1197.1.8 MA1197.1.9 MA1197.2.1 MA1197.2.10 MA1197.2.11 MA1197.2.12 MA1197.2.13 MA1197.2.14 MA1197.2.15 MA1197.2.16 / MA1197.2.4 MA1197.2.17 / MA1197.2.18 MA1197.2.19 MA1197.2.2 MA1197.2.20 MA1197.2.3 MA1197.2.5 MA1197.2.6 MA1197.2.7 MA1197.2.8 MA1197.2.9 |
Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.