Transcription Factor
Accessions: | 6fas_B (3D-footprint 20231221) |
Names: | B3 domain-containing transcription repressor VAL1, Protein HIGH-LEVEL EXPRESSION OF SUGAR-INDUCIBLE 2, Protein VP1/ABI3-LIKE 1, VAL1_ARATH |
Organisms: | Arabidopsis thaliana |
Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
Length: | 109 |
Pfam Domains: | 9-106 B3 DNA binding domain |
Sequence: (in bold interface residues) | 1 MNLNIVPLFEKTLSASDAGRIGRLVLPKAAEAYFPPISQSEGIPLKIQDVRGREWTFQFR 60 61 YWPNNNSRMYVLEGVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAA |
Interface Residues: | 14, 16, 21, 22, 23, 25, 60, 62, 63, 64, 65, 66, 67, 68, 69 |
3D-footprint Homologues: | 6j9b_A, 6fas_B, 7et6_A, 6j9c_D, 6sdg_B |
Binding Motifs: | 6fas_B CATgC |
Binding Sites: | 6fas_E 6fas_F |
Publications: | Sasnauskas G, Kauneckaite K, Siksnys V. Structural basis of DNA target recognition by the B3 domain of Arabidopsis epigenome reader VAL1. Nucleic Acids Res 46:4316-4324 (2018). [Pubmed] |
Related annotations: | PaperBLAST |
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