DNA Binding Motif

						

			
Accessions: 6fas_B (3D-footprint 20231221)

			
Names: B3 domain-containing transcription repressor VAL1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: Crystal structure of VAL1 B3 domain in complex with cognate DNA
Length: 5
Consensus: CATgC
Weblogo: 
PSSM: P0      A      C      G      T
01      1     76      0     19      C
02     96      0      0      0      A
03      0      0      0     96      T
04     19     19     39     19      g
05      0     96      0      0      C
Binding TFs: 6fas_B (B3 DNA binding domain)
Binding Sites: 6fas_E
6fas_F
			
Publications: Sasnauskas G, Kauneckaite K, Siksnys V. Structural basis of DNA target recognition by the B3 domain of Arabidopsis epigenome reader VAL1. Nucleic Acids Res 46:4316-4324 (2018). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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