Transcription Factor
| Accessions: | T116796_1.02 (CISBP 1.02), T00193 (AthalianaCistrome v4_May2016) |
| Names: | AT1G74840, T116796_1.02;, T00193; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, AthalianaCistrome v4_May2016 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB-related |
| Length: | 265 |
| Pfam Domains: | 97-141 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MADGSTSSSESTTACAGSGTRREIMLFGVRVVLDPMRKCVSLNNLSDYEQTAETPKIDGE 60 61 DRDEQDMNKTPAGYASADEALPMSSSNGKIERKRGVPWTEEEHKLFLLGLQRVGKGDWKG 120 121 ISRNFVKTRTSTQVASHAQKYFLRRSNLNRRRRRSSLFDMTTDTVIPMEEDHQVLIQENT 180 181 SQSSSPVPEINNFSIHPVMQVFPEFPVPTGNQSYGQLTSSNLINLVPLTFQSSPAPLSLN 240 241 LSLASSNLNEPSPSMHPAFNTIGVA |
| Interface Residues: | 95, 131, 132, 135, 136, 139, 140 |
| 3D-footprint Homologues: | 8xas_E, 1w0t_A |
| Binding Motifs: | M1322_1.02 tccGGATAwCy M0598 wwTGGATAArr M0615 wwyyTTATCCAwww |
| Related annotations: | PaperBLAST |
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