Transcription Factor

						

			
Accessions: 1mey_F (3D-footprint 20231221)

			
Names: CONSENSUS ZINC FINGER
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Length: 84
Pfam Domains:      2-15 Zinc-finger double domain
     4-27 C2H2-type zinc finger
     5-27 C2H2-type zinc finger
     5-27 Zinc finger, C2H2 type
    19-43 Zinc-finger double domain
    32-55 C2H2-type zinc finger
    33-55 C2H2-type zinc finger
    33-55 Zinc finger, C2H2 type
    47-72 Zinc-finger double domain
    60-83 C2H2-type zinc finger
    61-83 C2H2-type zinc finger
    61-83 Zinc finger, C2H2 type
Sequence: 
(in bold interface residues)		   1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP   60
  61 YKCPECGKSFSRSDHLSRHQRTHQ
Interface Residues: 2, 5, 15, 16, 17, 18, 19, 21, 22, 26, 43, 44, 45, 46, 47, 48, 49, 50, 51, 54, 71, 72, 73, 74, 75, 76, 77, 78, 79
3D-footprint Homologues: 1yuj_A, 2kmk_A, 8cuc_F, 7y3l_A, 6ml4_A, 7n5w_A, 1tf3_A, 3uk3_C, 6jnm_A, 2gli_A, 7eyi_G, 5k5l_F, 8ssu_A, 1ubd_C, 4x9j_A, 2i13_A, 1mey_C, 6blw_A, 5kkq_D, 6u9q_A, 5yel_A, 5ei9_F, 2jpa_A, 5kl3_A, 7ysf_A, 1g2f_F, 6wmi_A, 5k5i_A, 8ssq_A, 7w1m_H, 5und_A, 5v3j_F, 8h9h_G, 2lt7_A, 7y3m_I, 6e94_A, 1tf6_A, 6a57_A, 1llm_D, 8gn3_A, 2wbs_A, 1f2i_J, 7txc_E, 2drp_D, 4m9v_C, 5yj3_D
Binding Motifs: 1mey_CF GGGGCAGAACnnTGAGGCAGAAC
Binding Sites: 1mey_A
1mey_B
			
Publications: Kim C.A, Berg J.M. A 2.2 A resolution crystal structure of a designed zinc finger protein bound to DNA. Nature structural biology 3:940-5 (1996). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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