DNA Binding Motif

						

			
Accessions: 1mey_CF (3D-footprint 20231221)

			
Names: CONSENSUS ZINC FINGER
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Description: CRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO DNA
Length: 23
Consensus: GGGGCAGAACnnTGAGGCAGAAC
Weblogo: 
PSSM: P0      A      C      G      T
01      0      0     96      0      G
02      6      5     75     10      G
03      0      0     96      0      G
04      0      0     96      0      G
05      0     96      0      0      C
06     96      0      0      0      A
07      0      0     96      0      G
08     96      0      0      0      A
09     96      0      0      0      A
10      0     90      0      6      C
11     24     24     24     24      n
12     24     24     24     24      n
13      5      5      5     81      T
14      6      5     80      5      G
15     70      5     16      5      A
16      0      0     96      0      G
17      0      0     96      0      G
18      1     90      5      0      C
19     96      0      0      0      A
20      0      0     96      0      G
21     96      0      0      0      A
22     96      0      0      0      A
23      0     80      5     11      C
Type: Heterodimer
Binding TFs: 1mey_C (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
1mey_F (Zinc finger, C2H2 type, Zinc-finger double domain, C2H2-type zinc finger, C2H2-type zinc finger)
Binding Sites: 1mey_A
1mey_B
			
Publications: Kim C.A, Berg J.M. A 2.2 A resolution crystal structure of a designed zinc finger protein bound to DNA. Nature structural biology 3:940-5 (1996). [Pubmed]

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.