Transcription Factor

						

			
Accessions: 6ycq_B (3D-footprint 20231221)

			
Names: ARFA_ARATH, Auxin response factor 1
Organisms: Arabidopsis thaliana
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: Q8L7G0
Length: 343
Pfam Domains:   112-213 B3 DNA binding domain
  238-320 Auxin response factor
Sequence: 
(in bold interface residues)		   1 GVLSDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSK   60
  61 ILCKVINIQRRAEPETDEVYAQITLLPELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASD  120
 121 TSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTG  180
 181 WSVFVSSKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAH  240
 241 AITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSGTI  300
 301 VGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPL
Interface Residues: 119, 124, 125, 126, 128, 169, 171, 172, 174
3D-footprint Homologues: 6sdg_B, 6ycq_A, 7et6_A
Binding Motifs: 6ycq_AB TGTCGGtnnnnnGCCGACAA
Binding Sites: 6ycq_C
6ycq_D
			
Publications: Freire-Rios A, Tanaka K, Crespo I, van der Wijk E, Sizentsova Y, Levitsky V, Lindhoud S, Fontana M, Hohlbein J, Boer DR, Mironova V, Weijers D. Architecture of DNA elements mediating ARF transcription factor binding and auxin-responsive gene expression in Arabidopsis. Proc Natl Acad Sci U S A 117:24557-24566 (2020). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.