Transcription Factor
| Accessions: | ERF1 (ArabidopsisPBM 20140210), T000649_1.02 (CISBP 1.02), Q8LDC8 (JASPAR 2024), T14076 (AthalianaCistrome v4_May2016) |
| Names: | ATERF1, ERF1, T000649_1.02;, AtERF1B, EREBP-1B, ERF92_ARATH, Ethylene-responsive element-binding factor 1B, Ethylene-responsive transcription factor 1B, AT3G23240, T14076; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | ArabidopsisPBM 20140210 1, CISBP 1.02 2, JASPAR 2024 3, AthalianaCistrome v4_May2016 4 1 Franco-Zorrilla J.M, López-Vidriero I, Carrasco J.L, Godoy M, Vera P, Solano R. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proceedings of the National Academy of Sciences of the United States of America : (2014). [Pubmed] 2 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 3 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 4 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | AP2/EREBP (ERF), experiment type:PBM, family:AP2, ecotype:Col-0, experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 218 |
| Pfam Domains: | 81-131 AP2 domain |
| Sequence: (in bold interface residues) | 1 MDPFLIQSPFSGFSPEYSIGSSPDSFSSSSSNNYSLPFNENDSEEMFLYGLIEQSTQQTY 60 61 IDSDSQDLPIKSVSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAAL 120 121 AYDQAAFSMRGSSAILNFSAERVQESLSEIKYTYEDGCSPVVALKRKHSMRRRMTNKKTK 180 181 DSDFDHRSVKLDNVVVFEDLGEQYLEELLGSSENSGTW |
| Interface Residues: | 86, 88, 89, 90, 94, 96, 98, 101, 106, 108 |
| 3D-footprint Homologues: | 5wx9_A, 7wq5_A, 1gcc_A, 7et4_D |
| Binding Motifs: | ERF1 rsCGCCGCCa MA0567.1 mGCCGCCa M0025_1.02 smGCCGCCry M0104 cykymwymGCCGCCryyrchrcygycky |
| Publications: | Godoy M, Franco-Zorrilla J.M, Pérez-Pérez J, Oliveros J.C, Lorenzo O, Solano R. Improved protein-binding microarrays for the identification of DNA-binding specificities of transcription factors. The Plant journal : for cell and molecular biology 66:700-11 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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